Publikationsliste Prof. Dr. Sophia Rudorf
Zeige Ergebnisse 1 - 10 von 15
2024
Gotsmann VL, Ting MKY, Haase N, Rudorf S, Zoschke R, Willmund F. Utilizing high-resolution ribosome profiling for the global investigation of gene expression in Chlamydomonas. Plant Journal. 2024 Feb 26;117(5):1614-1634. doi: 10.1111/tpj.16577
Haase N, Holtkamp W, Christ S, Heinemann D, Rodnina MV, Rudorf S. Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation. PLoS Computational Biology. 2024 Mär 5;20(3): e1011918. doi: 10.1101/2023.05.17.541147, 10.1371/journal.pcbi.1011918
2023
Förste S, Vonshak O, Daube SS, Bar-Ziv RH, Lipowsky R, Rudorf S. Computational analysis of protein synthesis, diffusion, and binding in compartmental biochips. Microbial cell factories. 2023 Dez;22(1):244. Epub 2023 Nov 30. doi: 10.1186/s12934-023-02237-5
Lankeit J, Förste S, Rudorf S. Dominance analysis of competing protein assembly pathways. PLOS ONE. 2023 Feb 24;18(2):e0281964. doi: 10.1371/journal.pone.0281964
2022
Alirezaeizanjani Z, Trösemeier JH, Kamp C, Rudorf S. Tailoring Codon Usage to the Underlying Biology for Protein Expression Optimization. in Garcia Fruitos E, Aris Giralt A, Hrsg., Insoluble Proteins: Methods and Protocols. New York: Humana Press Inc. 2022. S. 85-92. (Methods in Molecular Biology). doi: 10.1007/978-1-0716-1859-2_4
2020
Trösemeier JH, Rudorf S, Lößner H, Hofner B, Kamp C. Modellentwicklung und maschinelles Lernen erhöhen die Proteinausbeute. BioSpektrum. 2020 Mai;26(3):262-264. doi: 10.1007/s12268-020-1369-3
Vonshak O, Divon Y, Förste S, Garenne D, Noireaux V, Lipowsky R et al. Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry. Nature nanotechnology. 2020 Sep;15(9):783-791. Epub 2020 Jul 20. doi: 10.1038/s41565-020-0720-7
2019
Rudorf S. Efficiency of protein synthesis inhibition depends on tRNA and codon compositions. PLoS Computational Biology. 2019 Aug 1;15(8):e1006979. doi: 10.1371/journal.pcbi.1006979
Trösemeier J-H, Rudorf S, Loessner H, Hofner B, Reuter A, Schulenborg T et al. Optimizing the dynamics of protein expression. Scientific reports. 2019 Mai 17;9(1):7511. doi: 10.1038/s41598-019-43857-5, 10.1038/s41598-020-62686-5
2018
Haase N, Holtkamp W, Lipowsky R, Rodnina M, Rudorf S. Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis. Nucleic acids research. 2018 Dez 14;46(22):e130. Epub 2018 Aug 10. doi: 10.1093/nar/gky740, 10.1093/nar/gky1101
